Collaborators
The Stoddard Lab Collaborators
Click on their pictures to go to their lab home pages or departmental pages.
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Ray Monnat, Jr. Departments of Pathology and Genome Sciences University of Washington  Molecular Biology of Double Strand Breaks; Homing Endonucleases Flick, K.E., Jurica, M. S., Monnat, R. J. Jr., and Stoddard, B. L. (1998) "DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI" Nature 394: 96 - 101. |
Andy Scharenberg Department of Pediatrics University of Washington School of Medicine and Children's Hospital  Molecular Biology of Ions Channels; Gene Therapy and SCID disorders Shen, B. W., Perraud, A. -L., Scharenberg, A. M. and Stoddard, B. L. (2003) "The crystal structure and mutational analysis of human NUDT9" J. Mol. Biol. 332(2):385-98. |
David Baker Departments of Biochemistry and Bioengineering University of Washington  Protein Structure Prediction and Engineering Kuhlman, B., Dantas, G., Ireton, G., Varani, G., Stoddard, B. L. and Baker, D. (2004) "Design of a novel protein fold with atomic accuracy" Science 302: 1364 - 1368. |
Margaret Black Department of Pharmaceutical Sciences Washington State University  Directed Evolution of Enzymes and Anti-tumor Gene Therapy Ireton, G., McDermitt, G., Black, M. and Stoddard, B. L. (2002) "The structure of Escherichia coli cytosine deaminase" J. Mol. Biol. 315(4): 687 - 697.
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Monique Turmel and Claude Lemieux Centre de recherche sur la Fonction, la structure et l'Ingenierie des Proteines Universite Laval, Quebec City  Evolution and molecular biology of mobile introns and homing endonucleases
Chevalier, B., Turmel, M., Lemieux, C., Monnat, R. J. Jr. and Stoddard, B. L. (2003) "Flexible DNA target site recognition by divergent homing endonuclease |
Jim Samuelson, Geoff Wilson, John Pelletier, et al. New England Biolabs Ipswich, MA  Molecular Biology of Restriction Endonucleases, Polymerases and Kinase/Phosphatases Galburt, E., Pelletier, J., Wilson G., and Stoddard, B. L. (2002) "Structure of a tRNA repair enzyme and molecular biology workhorse, T4 polynucleotide kinase" Structure 10 (9): 1249 - 1260. |
Mark Caprara Center for RNA Microbiology Case Western University, Cleveland OH  Molecular Biology of RNA splicing and Maturase cofactors Bolduc, J. M., et al. and, Caprara, M. G., Waring, R. B. and Stoddard, B. L. (2003) "Structural and biochemical analyses of DNA and RNA binding by a bifunctional homing endonuclease and group I intron splicing factor" Genes and Development 17: 2875-2888. |
David Shub Departments of Pathology and Genome Sciences State University of New York in Albany  Molecular Biology of mobile introns and homing endonucleases Shen, B. W., Landthaler, M., Shub, D. A. and Stoddard, B. L. (2004) "DNA binding and cleavage by the HNH homing endonuclease I-HmuI" J. Mol. Biol. 342 (1): 34 - 56. |
Andy Mesecar Departments of Pathology and Genome Sciences University of Illinois in Chicago  Structural enzymology and engineering Jurica, M. S., Heath, P. J., Shi, W., Mesecar, A., and Stoddard, B. L. (1998) "The allosteric regulation of pyruvate kinase by fructose-1,6-bis-phosphate" Structure 6 (2): 195 - 210. |
Len Seligman Departments of Biology Pomona College  Selection and engineering of homing endonucleases Sussman, D., Chadsey, M., Fauce, S., Engel, A., Bruett, A., Monnat, R. J. Jr., Stoddard, B. L. and Seligman, L. (2004) "Isolation and characterization of new homing endonuclease specificities at individual target site positions" J. Mol. Biol. 342 (1): 31 - 41. |
Nina Salama Human Biology Research Division Fred Hutchinson Cancer Center  Structural genomic analyses of Helicobacter pylori What? No papers yet?!!?? |
Julian Simon Clinical and Human Biology Research Divisions Fred Hutchinson Cancer Center  Chemical biology and compound screening against validated drug targets Spiegel, P.C., Kaiser, S. M., Simon, J. and Stoddard, B. L. (2004) "Disruption of protein-membrane binding and identification of small molecule inhibitors of coagulation factor VIII" Chemistry and Biology 11 (10): 1413 - 1422. |
