MGRP package documentation

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mgrp-package Multiple Gene Risk Prediction Performance Simulation
simulateRiskPerf Simulate genotypes and risk prediction performance.
simulateGenotypes Simulate risk prediction genotypes and disease states.
summarizeRiskSet Calculate performance of the risk markers using various measures.
calcBaselineLOdds Calculate Baseline Log-Odds for a genotype comprised of a specified number of genes with different frequencies and disease odds ratios.
calcBaselineLOddsFromSample Calculate Baseline Log-Odds required for a desired disease prevalence given a sample of genotypes, and a genotype profile specifying the risk allele frequencies and the disease odds ratios (see calcBaselineLOdds).
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