Useful Links

General Zebrafish Primer Analysis Sites
  • Zebrafish Information Network (ZFIN)
  • Zebrafish Atlas
  • Zebrafish Book

  • Primer3
  • CODESHOP
  • dCAPS
    • Zebrafish and Comparative Genomics Other DNA Databases
  • Zebrafish Genome
  • Vertebrate Synteny Database
  • Zebrafish Gene and Microarray Annotation Project
  • Becker Lab Atlas of Noncoding Conserved Regions
  • Bejerano Lab Genomics Regions Enrichment of Annotations Tool

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  • NCBI
  • UCSC Genome Browser
  • TopHat Spliced Read Mapper for RNA-Seq
  • Bowtie Short Read Aligner for Illumina Data
  • Cufflinks Transcript Assembly for RNA-Seq
    • Zebrafish Reverse Genetics Resources Zebrafish Forward Genetics Resources
  • Zebrafish TILLING consortium
  • Sanger Mutation Resource
  • Joung Lab Zinc Finger Design

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  • Wolfram Goessling SNP track Mutation Mapping Site
  • Entrez SNP Database
    • Protein Databases Zebrafish Enhancer/Gene Trap Databases
  • ExPASy
  • Protein Data Bank at Brookhaven
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  • Kawakami Lab zTrap
  • A*STAR Enhancer Trap Database

    • Sequence Analysis Tools Microscopy Resources
  • DAVID Bioinformatics Database
  • BLAST 2 Sequences
  • Spidey mRNA to Genomic Alignment
  • GENSCAN Web Server at MIT
  • CODDLE
  • PARSESNP
  • ClustalW at EMBnet
  • BOXSHADE for Easy Viewing
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  • GoFigure

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