Links for Biochemistry, Molecular Biology and Structural Biology Research

Division of Basic Sciences FHCRC
PubMed (Literature Database Searching)
Fred Hutchinson Cancer Research Center
UW/FHCRC MCB Graduate Program
UW/FHCRC Biological Physics, Structure and Design
Graduate Program
(BPSD; formerly BMSD)
UW Department of Biochemistry

Companies
AbCam
American Type Culture Collection
Antibodies-online.com
BioRad
Roche
EMD Biosciences (Calbiochem, Novagen)
Eppendorf
Clontech
Cold Spring Harbor laboratory
Covance
GE Life Sciences
GraphPad Software
Invitrogen
Molecular Probes (Invitrogen)
NeoClone
New England Biolabs
Pierce
Protocol Online
Promega
Research Genetics (Invitrogen)
Sigma-Aldrich
Stratagene
Thermo Scientific (open biosystems)
Tosoh Bioscience
TriLink BioTechnologies
Upstate (Millipore)
Worthington Biochemical Corp.

Structural Biology Resources
Accelrys (MSI)
BackPhyre
DaliLite (structure alignment independent of sequence)

DisProt  (disorder prediction)

HHPred
Max-Plank Institute Bioinformatics Toolkit
Modeller (Sali Lab)
MolProbity
MolViz (molecular visualization resources)
PDB file manipulation software
Phyre2
PreDisorder (disorder prediction)
Protein Data Bank(retrieve structure coordinates)
PSIPRED (Protein secondary Structure Prediction Server)
UCLA protein analysis server

Computing
Apple Computer
CDW
Mac Connection
Macworld
Microsoft
Microsoft (Macintosh)
Other World Computing
Transintl.com (Memory upgrades)

Yeast Resources
Breeden Lab
Genolevures: hemiascomycetes genome database
Gottschling Lab
Open Biosystems
Yeast Genome.org (SGD)
Yeast Intron Database (Ares Lab)
Yeast labs home pages
Yeast Promoter Database
Yeast Resource Center, UW

Genome Database Search

Blast Search (NCBI)
Blastp fungi
ClustalW
Conserved Domain Database NCBI
ExPASY Bioinformatics Tools
Grishin Lab Software, Database, and Services
HHPred
IHOP (information hyperlinked over proteins)
NCBI
OrthoDB (catalog of Euk Orthologs)
PROMALS3D (multiple sequence and structure alignment)
Protein Data Bank
REP (Repeat search program)
Saccharomyces Genome Database
ScanProsite (protein motif search)
T-Coffee sequence alignment tools
UniProt database (search and retrieve proteins)

Webcutter

Journals
Cell Press
Current Biology
EMBO Journal
EMBO Reports
Genes and Development
Journal of Biological Chemistry
Journal of Molecular Biology
Molecular and Cellular Biology
Molecular Cell
Nature
Nature Structural and Molecular Biology
Nucleic Acids Research
PLOS
PNAS
Science
Transcription

Funding
FHCRC Grants and Contracts Office (also on CenterNet)
NIGMS
NIH Staff directory
RO1 Grant Application Writers Workbook

Miscellaneous
Biochemical Pathways
Centrifuge Helper Conversion Program
Crystal Mountain
Crystal Mountain Weather Forcast
Daily Show
Dictionary (hyper dictionary)
Dictionary (Merriam Webster)
Google Maps
Oligo Tm and other BioMath
Seattle Attractions
Seattle Mariners
Seattle Street Cameras
Seattle Streetcar
Seattle Traffic
Seattle Winter Street Conditions
Stevens Pass
Washington Trails Associations
Wait Wait


Science Videos (music and otherwise):
RNAi video (Nat Review Genetics, 2011)
A tribute to PCR: Who's your Daddy?
A dance to explain protein synthesis
Inner life of a cell (music)
Inner life of a cell (narration)
Response to a bad manuscript review
Response to a bad grant review

last updated June, 2012
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